Chapter 4 About this project
Session Information
## R version 4.3.2 (2023-10-31)
## Platform: x86_64-apple-darwin20 (64-bit)
## Running under: macOS Ventura 13.0.1
##
## Matrix products: default
## BLAS: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
## LAPACK: /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/lib/libRlapack.dylib; LAPACK version 3.11.0
##
## locale:
## [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
##
## time zone: Europe/Paris
## tzcode source: internal
##
## attached base packages:
## [1] stats4 stats graphics grDevices utils datasets methods base
##
## other attached packages:
## [1] ggpubr_0.6.0 stringr_1.5.1 pheatmap_1.0.12
## [4] reshape2_1.4.4 ggthemes_5.0.0 ggplot2_3.4.4
## [7] estimate_1.0.13 DESeq2_1.42.0 SummarizedExperiment_1.32.0
## [10] Biobase_2.62.0 MatrixGenerics_1.14.0 matrixStats_1.2.0
## [13] GenomicRanges_1.54.1 GenomeInfoDb_1.38.1 IRanges_2.36.0
## [16] S4Vectors_0.40.2 BiocGenerics_0.48.1 DT_0.31
## [19] dplyr_1.1.4 openxlsx_4.2.5.2
##
## loaded via a namespace (and not attached):
## [1] tidyselect_1.2.1 farver_2.1.1 bitops_1.0-7
## [4] fastmap_1.2.0 RCurl_1.98-1.13 digest_0.6.36
## [7] lifecycle_1.0.4 magrittr_2.0.3 compiler_4.3.2
## [10] sass_0.4.9 rlang_1.1.4 tools_4.3.2
## [13] utf8_1.2.4 yaml_2.3.10 knitr_1.48
## [16] ggsignif_0.6.4 S4Arrays_1.2.0 labeling_0.4.3
## [19] htmlwidgets_1.6.4 DelayedArray_0.28.0 plyr_1.8.9
## [22] RColorBrewer_1.1-3 abind_1.4-5 BiocParallel_1.36.0
## [25] withr_3.0.1 purrr_1.0.2 grid_4.3.2
## [28] fansi_1.0.6 colorspace_2.1-0 scales_1.3.0
## [31] cli_3.6.3 rmarkdown_2.27 crayon_1.5.3
## [34] generics_0.1.3 rstudioapi_0.15.0 cachem_1.1.0
## [37] zlibbioc_1.48.0 parallel_4.3.2 XVector_0.42.0
## [40] vctrs_0.6.5 Matrix_1.6-4 jsonlite_1.8.8
## [43] carData_3.0-5 bookdown_0.37 car_3.1-2
## [46] rstatix_0.7.2 locfit_1.5-9.8 tidyr_1.3.1
## [49] jquerylib_0.1.4 glue_1.7.0 codetools_0.2-19
## [52] cowplot_1.1.2 stringi_1.8.4 gtable_0.3.4
## [55] munsell_0.5.0 tibble_3.2.1 pillar_1.9.0
## [58] htmltools_0.5.8.1 GenomeInfoDbData_1.2.11 R6_2.5.1
## [61] evaluate_0.24.0 lattice_0.22-5 highr_0.11
## [64] backports_1.5.0 broom_1.0.5 bslib_0.8.0
## [67] Rcpp_1.0.13 zip_2.3.1 SparseArray_1.2.2
## [70] xfun_0.46 pkgconfig_2.0.3