Chapter 6 About PitNETs 2025
Session Information
## R version 4.3.2 (2023-10-31)
## Platform: x86_64-apple-darwin20 (64-bit)
## Running under: macOS 26.0.1
##
## Matrix products: default
## BLAS: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
## LAPACK: /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/lib/libRlapack.dylib; LAPACK version 3.11.0
##
## locale:
## [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
##
## time zone: Asia/Shanghai
## tzcode source: internal
##
## attached base packages:
## [1] stats4 stats graphics grDevices utils datasets methods base
##
## other attached packages:
## [1] stringr_1.5.1 scatterplot3d_0.3-44 ggthemes_5.1.0 limma_3.58.1
## [5] ggpubr_0.6.1 ggplot2_3.5.2 DESeq2_1.42.0 SummarizedExperiment_1.32.0
## [9] Biobase_2.62.0 MatrixGenerics_1.14.0 matrixStats_1.5.0 GenomicRanges_1.54.1
## [13] GenomeInfoDb_1.38.1 IRanges_2.36.0 S4Vectors_0.40.2 BiocGenerics_0.48.1
## [17] nlme_3.1-168 DT_0.33 dplyr_1.1.4 openxlsx_4.2.8
##
## loaded via a namespace (and not attached):
## [1] tidyselect_1.2.1 farver_2.1.2 bitops_1.0-9 fastmap_1.2.0 RCurl_1.98-1.17
## [6] digest_0.6.37 lifecycle_1.0.4 statmod_1.5.0 magrittr_2.0.3 compiler_4.3.2
## [11] rlang_1.1.6 sass_0.4.10 tools_4.3.2 yaml_2.3.10 knitr_1.50
## [16] ggsignif_0.6.4 S4Arrays_1.2.0 labeling_0.4.3 htmlwidgets_1.6.4 DelayedArray_0.28.0
## [21] RColorBrewer_1.1-3 abind_1.4-8 BiocParallel_1.36.0 withr_3.0.2 purrr_1.1.0
## [26] grid_4.3.2 colorspace_2.1-1 scales_1.4.0 dichromat_2.0-0.1 cli_3.6.5
## [31] rmarkdown_2.29 crayon_1.5.3 generics_0.1.4 rstudioapi_0.17.1 cachem_1.1.0
## [36] zlibbioc_1.48.2 parallel_4.3.2 XVector_0.42.0 vctrs_0.6.5 Matrix_1.6-4
## [41] jsonlite_2.0.0 carData_3.0-5 bookdown_0.43 car_3.1-3 rstatix_0.7.2
## [46] ggrepel_0.9.6 Formula_1.2-5 locfit_1.5-9.12 jquerylib_0.1.4 tidyr_1.3.1
## [51] glue_1.8.0 codetools_0.2-20 stringi_1.8.7 gtable_0.3.6 tibble_3.3.0
## [56] pillar_1.11.0 htmltools_0.5.8.1 GenomeInfoDbData_1.2.11 R6_2.6.1 evaluate_1.0.4
## [61] lattice_0.22-7 backports_1.5.0 broom_1.0.8 bslib_0.9.0 Rcpp_1.1.0
## [66] zip_2.3.3 SparseArray_1.2.2 xfun_0.52 pkgconfig_2.0.3