R Session info
# Show session information
sessionInfo()
## R version 4.3.2 (2023-10-31)
## Platform: x86_64-apple-darwin20 (64-bit)
## Running under: macOS Monterey 12.6.8
##
## Matrix products: default
## BLAS: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
## LAPACK: /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/lib/libRlapack.dylib; LAPACK version 3.11.0
##
## locale:
## [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
##
## time zone: Asia/Shanghai
## tzcode source: internal
##
## attached base packages:
## [1] stats graphics grDevices utils datasets methods base
##
## other attached packages:
## [1] pheatmap_1.0.12 gmodels_2.18.1.1 ggthemes_4.2.4 ggpubr_0.6.0
## [5] PIONE_1.0.0 XGR_1.1.9 dnet_1.1.7 supraHex_1.40.0
## [9] hexbin_1.28.3 igraph_1.5.1 limma_3.58.1 rstatix_0.7.2
## [13] patchwork_1.1.3 lubridate_1.9.3 forcats_1.0.0 stringr_1.5.1
## [17] dplyr_1.1.3 purrr_1.0.2 readr_2.1.4 tidyr_1.3.0
## [21] tibble_3.2.1 ggplot2_3.4.4 tidyverse_2.0.0 OlinkAnalyze_3.6.0
## [25] DT_0.30 openxlsx_4.2.5.2 knitr_1.45
##
## loaded via a namespace (and not attached):
## [1] RColorBrewer_1.1-3 rstudioapi_0.15.0 jsonlite_1.8.7
## [4] magrittr_2.0.3 TH.data_1.1-2 estimability_1.4.1
## [7] farver_2.1.1 nloptr_2.0.3 rmarkdown_2.25
## [10] fs_1.6.3 zlibbioc_1.48.0 ragg_1.2.6
## [13] vctrs_0.6.4 memoise_2.0.1 minqa_1.2.6
## [16] RCurl_1.98-1.13 htmltools_0.5.7 curl_5.1.0
## [19] broom_1.0.5 cellranger_1.1.0 sass_0.4.7
## [22] bslib_0.5.1 htmlwidgets_1.6.2 sandwich_3.0-2
## [25] emmeans_1.8.9 zoo_1.8-12 cachem_1.0.8
## [28] commonmark_1.9.0 lifecycle_1.0.4 ggnetwork_0.5.12
## [31] pkgconfig_2.0.3 Matrix_1.6-2 R6_2.5.1
## [34] fastmap_1.1.1 GenomeInfoDbData_1.2.11 digest_0.6.33
## [37] numDeriv_2016.8-1.1 colorspace_2.1-0 S4Vectors_0.40.1
## [40] textshaping_0.3.7 crosstalk_1.2.0 GenomicRanges_1.54.1
## [43] labeling_0.4.3 gdata_3.0.0 fansi_1.0.5
## [46] timechange_0.2.0 polyclip_1.10-6 httr_1.4.7
## [49] abind_1.4-5 compiler_4.3.2 withr_2.5.2
## [52] backports_1.4.1 viridis_0.6.4 carData_3.0-5
## [55] highr_0.10 ggforce_0.4.1 ggsignif_0.6.4
## [58] MASS_7.3-60 gtools_3.9.4 tools_4.3.2
## [61] ape_5.7-1 zip_2.3.0 glue_1.6.2
## [64] nlme_3.1-163 grid_4.3.2 generics_0.1.3
## [67] gtable_0.3.4 tzdb_0.4.0 hms_1.1.3
## [70] tidygraph_1.2.3 xml2_1.3.5 car_3.1-2
## [73] utf8_1.2.4 XVector_0.42.0 BiocGenerics_0.48.1
## [76] ggrepel_0.9.4 pillar_1.9.0 RCircos_1.2.2
## [79] splines_4.3.2 tweenr_2.0.2 lattice_0.22-5
## [82] survival_3.5-7 tidyselect_1.2.0 pbapply_1.7-2
## [85] gridExtra_2.3 osfr_0.2.9 bookdown_0.36
## [88] IRanges_2.36.0 crul_1.4.0 stats4_4.3.2
## [91] xfun_0.41 graphlayouts_1.0.2 statmod_1.5.0
## [94] stringi_1.8.1 yaml_2.3.7 boot_1.3-28.1
## [97] evaluate_0.23 codetools_0.2-19 httpcode_0.3.0
## [100] ggraph_2.1.0 BiocManager_1.30.22 Rgraphviz_2.46.0
## [103] graph_1.80.0 cli_3.6.1 xtable_1.8-4
## [106] systemfonts_1.0.5 munsell_0.5.0 jquerylib_0.1.4
## [109] Rcpp_1.0.11 GenomeInfoDb_1.38.1 readxl_1.4.3
## [112] coda_0.19-4 png_0.1-8 XML_3.99-0.15
## [115] parallel_4.3.2 ellipsis_0.3.2 bitops_1.0-7
## [118] lme4_1.1-35.1 viridisLite_0.4.2 mvtnorm_1.2-3
## [121] lmerTest_3.1-3 scales_1.2.1 crayon_1.5.2
## [124] rlang_1.1.2 multcomp_1.4-25