Chapter 7 About this project
Session Information
## R version 4.3.2 (2023-10-31)
## Platform: x86_64-apple-darwin20 (64-bit)
## Running under: macOS Ventura 13.0.1
##
## Matrix products: default
## BLAS: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
## LAPACK: /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/lib/libRlapack.dylib; LAPACK version 3.11.0
##
## locale:
## [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
##
## time zone: Asia/Shanghai
## tzcode source: internal
##
## attached base packages:
## [1] stats4 stats graphics grDevices utils datasets methods base
##
## other attached packages:
## [1] fmsb_0.7.5 ggthemes_5.0.0 stringr_1.5.1
## [4] enrichR_3.2 survival_3.5-7 survminer_0.4.9
## [7] gplots_3.1.3 pheatmap_1.0.12 limma_3.58.1
## [10] ggpubr_0.6.0 ggplot2_3.4.4 data.table_1.14.10
## [13] dendextend_1.17.1 DESeq2_1.42.0 SummarizedExperiment_1.32.0
## [16] Biobase_2.62.0 MatrixGenerics_1.14.0 matrixStats_1.2.0
## [19] GenomicRanges_1.54.1 GenomeInfoDb_1.38.1 IRanges_2.36.0
## [22] S4Vectors_0.40.2 BiocGenerics_0.48.1 nlme_3.1-164
## [25] DT_0.31 dplyr_1.1.4 openxlsx_4.2.5.2
##
## loaded via a namespace (and not attached):
## [1] bitops_1.0-7 gridExtra_2.3 rlang_1.1.2 magrittr_2.0.3
## [5] compiler_4.3.2 vctrs_0.6.5 pkgconfig_2.0.3 crayon_1.5.2
## [9] fastmap_1.1.1 backports_1.4.1 XVector_0.42.0 labeling_0.4.3
## [13] KMsurv_0.1-5 caTools_1.18.2 utf8_1.2.4 rmarkdown_2.25
## [17] purrr_1.0.2 xfun_0.41 WriteXLS_6.4.0 zlibbioc_1.48.0
## [21] cachem_1.0.8 jsonlite_1.8.8 highr_0.10 DelayedArray_0.28.0
## [25] BiocParallel_1.36.0 broom_1.0.5 parallel_4.3.2 R6_2.5.1
## [29] bslib_0.6.1 stringi_1.8.3 RColorBrewer_1.1-3 car_3.1-2
## [33] jquerylib_0.1.4 Rcpp_1.0.11 bookdown_0.37 knitr_1.45
## [37] zoo_1.8-12 Matrix_1.6-4 splines_4.3.2 tidyselect_1.2.0
## [41] rstudioapi_0.15.0 abind_1.4-5 yaml_2.3.8 viridis_0.6.4
## [45] codetools_0.2-19 curl_5.2.0 lattice_0.22-5 tibble_3.2.1
## [49] withr_2.5.2 evaluate_0.23 zip_2.3.0 survMisc_0.5.6
## [53] pillar_1.9.0 carData_3.0-5 KernSmooth_2.23-22 generics_0.1.3
## [57] RCurl_1.98-1.13 munsell_0.5.0 scales_1.3.0 gtools_3.9.5
## [61] xtable_1.8-4 glue_1.6.2 tools_4.3.2 locfit_1.5-9.8
## [65] ggsignif_0.6.4 grid_4.3.2 tidyr_1.3.0 colorspace_2.1-0
## [69] GenomeInfoDbData_1.2.11 cli_3.6.2 km.ci_0.5-6 fansi_1.0.6
## [73] S4Arrays_1.2.0 viridisLite_0.4.2 gtable_0.3.4 rstatix_0.7.2
## [77] sass_0.4.8 digest_0.6.33 SparseArray_1.2.2 farver_2.1.1
## [81] rjson_0.2.21 htmlwidgets_1.6.4 htmltools_0.5.7 lifecycle_1.0.4
## [85] httr_1.4.7 statmod_1.5.0