R Session info
# Show session information
sessionInfo()
## R version 4.2.3 (2023-03-15)
## Platform: x86_64-apple-darwin17.0 (64-bit)
## Running under: macOS Monterey 12.6.8
##
## Matrix products: default
## LAPACK: /Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libRlapack.dylib
##
## locale:
## [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
##
## attached base packages:
## [1] stats4 stats graphics grDevices utils datasets methods base
##
## other attached packages:
## [1] knitr_1.44 SingleR_2.0.0 SummarizedExperiment_1.28.0
## [4] Biobase_2.58.0 GenomicRanges_1.50.2 GenomeInfoDb_1.34.9
## [7] IRanges_2.32.0 S4Vectors_0.36.2 BiocGenerics_0.44.0
## [10] MatrixGenerics_1.10.0 harmony_1.1.0 Rcpp_1.0.11
## [13] pheatmap_1.0.12 ggthemes_4.2.4 stringr_1.5.0
## [16] openxlsx_4.2.5.2 ggpubr_0.6.0 ggplot2_3.4.4
## [19] matrixStats_1.0.0 gplots_3.1.3 Matrix_1.6-1
## [22] dplyr_1.1.3 SeuratObject_4.1.4 Seurat_4.4.0
##
## loaded via a namespace (and not attached):
## [1] utf8_1.2.4 spatstat.explore_3.2-5 reticulate_1.34.0
## [4] tidyselect_1.2.0 htmlwidgets_1.6.2 grid_4.2.3
## [7] BiocParallel_1.32.6 Rtsne_0.16 munsell_0.5.0
## [10] ScaledMatrix_1.6.0 codetools_0.2-19 ragg_1.2.6
## [13] ica_1.0-3 future_1.33.0 miniUI_0.1.1.1
## [16] withr_2.5.1 spatstat.random_3.2-1 colorspace_2.1-0
## [19] progressr_0.14.0 rstudioapi_0.15.0 ROCR_1.0-11
## [22] ggsignif_0.6.4 tensor_1.5 listenv_0.9.0
## [25] labeling_0.4.3 GenomeInfoDbData_1.2.9 polyclip_1.10-6
## [28] farver_2.1.1 parallelly_1.36.0 vctrs_0.6.4
## [31] generics_0.1.3 xfun_0.40 R6_2.5.1
## [34] ggbeeswarm_0.7.2 rsvd_1.0.5 cachem_1.0.8
## [37] bitops_1.0-7 spatstat.utils_3.0-3 DelayedArray_0.24.0
## [40] promises_1.2.1 scales_1.2.1 beeswarm_0.4.0
## [43] gtable_0.3.4 beachmat_2.14.2 globals_0.16.2
## [46] goftest_1.2-3 rlang_1.1.1 systemfonts_1.0.5
## [49] splines_4.2.3 rstatix_0.7.2 lazyeval_0.2.2
## [52] spatstat.geom_3.2-7 broom_1.0.5 yaml_2.3.7
## [55] reshape2_1.4.4 abind_1.4-5 backports_1.4.1
## [58] httpuv_1.6.12 tools_4.2.3 bookdown_0.36
## [61] ellipsis_0.3.2 jquerylib_0.1.4 RColorBrewer_1.1-3
## [64] ggridges_0.5.4 plyr_1.8.9 sparseMatrixStats_1.10.0
## [67] zlibbioc_1.44.0 purrr_1.0.2 RCurl_1.98-1.12
## [70] deldir_1.0-9 pbapply_1.7-2 cowplot_1.1.1
## [73] zoo_1.8-12 ggrepel_0.9.4 cluster_2.1.4
## [76] magrittr_2.0.3 data.table_1.14.8 scattermore_1.2
## [79] lmtest_0.9-40 RANN_2.6.1 fitdistrplus_1.1-11
## [82] patchwork_1.1.3 mime_0.12 evaluate_0.22
## [85] xtable_1.8-4 RhpcBLASctl_0.23-42 gridExtra_2.3
## [88] compiler_4.2.3 tibble_3.2.1 KernSmooth_2.23-22
## [91] htmltools_0.5.6.1 later_1.3.1 tidyr_1.3.0
## [94] MASS_7.3-60 car_3.1-2 cli_3.6.1
## [97] parallel_4.2.3 igraph_1.5.1 pkgconfig_2.0.3
## [100] sp_2.1-1 plotly_4.10.3 spatstat.sparse_3.0-2
## [103] vipor_0.4.5 bslib_0.5.1 XVector_0.38.0
## [106] digest_0.6.33 sctransform_0.4.1 RcppAnnoy_0.0.21
## [109] spatstat.data_3.0-1 rmarkdown_2.25 leiden_0.4.3
## [112] uwot_0.1.16 DelayedMatrixStats_1.20.0 shiny_1.7.5.1
## [115] gtools_3.9.4 lifecycle_1.0.3 nlme_3.1-163
## [118] jsonlite_1.8.7 carData_3.0-5 viridisLite_0.4.2
## [121] limma_3.54.2 fansi_1.0.5 pillar_1.9.0
## [124] lattice_0.22-4 ggrastr_1.0.2 fastmap_1.1.1
## [127] httr_1.4.7 survival_3.5-7 glue_1.6.2
## [130] zip_2.3.0 png_0.1-8 sass_0.4.7
## [133] stringi_1.7.12 textshaping_0.3.7 BiocSingular_1.14.0
## [136] caTools_1.18.2 irlba_2.3.5.1 future.apply_1.11.0
## [139] ape_5.7-1