Chapter 7 About HematoMap
Bug Reports
If there is any error in installing or librarying the HematoMap package, please contact us via e-mail dyt12423@rjh.com.cn (Yu-Ting Dai) or wen4862513@sjtu.edu.cn (Wen Ou-Yang).
Acknowledgment
This work was supported by the Interdisciplinary Program of Shanghai Jiao Tong University (project number YG2022QN008), the National Natural Science Foundation of China (82200153, 32170663), Innovative Research Team of High-Level Local Universities in Shanghai.
Session Information
## R version 4.3.2 (2023-10-31)
## Platform: x86_64-apple-darwin20 (64-bit)
## Running under: macOS Ventura 13.0.1
##
## Matrix products: default
## BLAS: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
## LAPACK: /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/lib/libRlapack.dylib; LAPACK version 3.11.0
##
## locale:
## [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
##
## time zone: Asia/Shanghai
## tzcode source: internal
##
## attached base packages:
## [1] parallel stats graphics grDevices utils datasets methods base
##
## other attached packages:
## [1] pbmcapply_1.5.1 shiny_1.8.0 Seurat_5.0.1 HematoMap_1.1.0 SeuratObject_5.0.1 sp_2.1-2
##
## loaded via a namespace (and not attached):
## [1] RColorBrewer_1.1-3 rstudioapi_0.15.0 jsonlite_1.8.8 magrittr_2.0.3 spatstat.utils_3.0-4 farver_2.1.1
## [7] rmarkdown_2.25 ragg_1.2.7 vctrs_0.6.5 ROCR_1.0-11 memoise_2.0.1 spatstat.explore_3.2-5
## [13] htmltools_0.5.7 sass_0.4.8 sctransform_0.4.1 parallelly_1.36.0 bslib_0.6.1 KernSmooth_2.23-22
## [19] htmlwidgets_1.6.4 ica_1.0-3 plyr_1.8.9 cachem_1.0.8 plotly_4.10.3 zoo_1.8-12
## [25] commonmark_1.9.0 igraph_1.6.0 mime_0.12 lifecycle_1.0.4 pkgconfig_2.0.3 Matrix_1.6-4
## [31] R6_2.5.1 fastmap_1.1.1 fitdistrplus_1.1-11 future_1.33.1 digest_0.6.34 colorspace_2.1-0
## [37] ggnewscale_0.4.9 patchwork_1.1.3 tensor_1.5 RSpectra_0.16-1 irlba_2.3.5.1 textshaping_0.3.7
## [43] labeling_0.4.3 progressr_0.14.0 fansi_1.0.6 spatstat.sparse_3.0-3 httr_1.4.7 polyclip_1.10-6
## [49] abind_1.4-5 compiler_4.3.2 withr_3.0.0 fastDummies_1.7.3 highr_0.10 MASS_7.3-60
## [55] tools_4.3.2 lmtest_0.9-40 httpuv_1.6.13 future.apply_1.11.1 goftest_1.2-3 glue_1.7.0
## [61] nlme_3.1-164 promises_1.2.1 gridtext_0.1.5 grid_4.3.2 Rtsne_0.17 cluster_2.1.6
## [67] reshape2_1.4.4 generics_0.1.3 gtable_0.3.4 spatstat.data_3.0-3 tidyr_1.3.0 data.table_1.15.0
## [73] xml2_1.3.6 utf8_1.2.4 spatstat.geom_3.2-7 RcppAnnoy_0.0.21 ggrepel_0.9.4 RANN_2.6.1
## [79] pillar_1.9.0 markdown_1.12 stringr_1.5.1 spam_2.10-0 RcppHNSW_0.5.0 later_1.3.2
## [85] splines_4.3.2 dplyr_1.1.4 ggtext_0.1.2 lattice_0.22-5 survival_3.5-7 deldir_2.0-2
## [91] tidyselect_1.2.0 miniUI_0.1.1.1 pbapply_1.7-2 knitr_1.45 gridExtra_2.3 bookdown_0.37
## [97] scattermore_1.2 xfun_0.41 matrixStats_1.2.0 stringi_1.8.3 lazyeval_0.2.2 yaml_2.3.8
## [103] evaluate_0.23 codetools_0.2-19 tibble_3.2.1 cli_3.6.2 uwot_0.1.16 systemfonts_1.0.5
## [109] xtable_1.8-4 reticulate_1.34.0 jquerylib_0.1.4 munsell_0.5.0 Rcpp_1.0.11 globals_0.16.2
## [115] spatstat.random_3.2-2 png_0.1-8 ellipsis_0.3.2 ggplot2_3.4.4 dotCall64_1.1-1 listenv_0.9.0
## [121] viridisLite_0.4.2 scales_1.3.0 ggridges_0.5.5 leiden_0.4.3.1 purrr_1.0.2 rlang_1.1.3
## [127] cowplot_1.1.2